Thanks,
the Status field was empty in GL_CompanyActiveBatch. after searching in windows explorer, I found that the batch files in SOxxx directory were locked by windows and there were .LCK files matching those batches too, but those were also locked (windows had them locked). I had earlier tried killing the task in master console that had everything locked, but it would not kill.
I used the PID number listed in master console and matched that up to the PID number in task manager and did end-task.
and that resolved it finally.