I have had to do what you need to do. I think when you start over, everything is reset. Make a copy of your efiling pr folder just in case.
Last year I notified all of my clients that I was not going to help them print 1099's or W-2's locally in the future. Aatrix is just too easy. Yes, if you have a LOT of employees, the price argument does have merit. But they already pay a buck per employee for filing the fed stuff. A stamp is almost 50 cents, so isn't the extra 50 cents worth letting Aatrix do it all.
As far as the proper paper, just print on blank paper, flip over and print the verbiage on the back. Some of my clients have done that and they haven't been harassed by the IRS. Knock on wood.